Publications

  1. L Rizik, L Danial, M Habib, R Weiss, R Daniel, “Synthetic neuromorphic computing in living cells” Nat. Commun.13, 5602 (2022).
  2. Ximing Li, Ramez Daniel, “Synthetic nonlinear computation for genetic circuit design“, Current Opinion in Biotechnology 76, 102727. https://doi.org/10.1016/j.copbio.2022.102727.
  3. Li, X., Rizik, L., Kravchik, V. et al. Synthetic neural-like computing in microbial consortia for pattern recognition. Nat Commun 12, 3139 (2021). https://doi.org/10.1038/s41467-021-23336-0
  4. Phyana Litovco, Natalia Barger, Ximing Li, Ramez Daniel,Topologies of synthetic gene circuit for optimal fold change activation, Nucleic Acids Research, 2021; gkab253, https://doi.org/10.1093/nar/gkab253
  5. N. Barger, I. Oren, X. Li, M. Habib, R. Daniel, A Whole-Cell Bacterial Biosensor for Blood Markers Detection in Urine . ACS Synthetic Biology 2021 10 (5), 1132-1142, doi:10.1021/acssynbio.0c00640.
  6. E. A. Chaimovitz, E. Reznik, M. Habib, N. Korin, R. Daniel, Continuous Measurement of Biological Noise in Escherichia Coli Using Time-lapse Microscopy, 1–24 (2021).
  7. Lena Danielli, Ximing Li, Tamir Tuler and Ramez Daniel, “Quantifying the distribution of protein oligomerization degree reflects cellular information capacity“. Sci Rep10, 17689 (2020). https://doi.org/10.1038/s41598-020-74811-5
  8. H. A. Hanna, L. Danial, S. Kvatinsky, and R. Daniel, “Cytomorphic Electronics with Memristors for Modeling Fundamental Genetic Circuits”, IEEE Trans Biomed Circuits Syst. 2020 Jan 14. doi:10.1109/TBCAS.2020.296663.
  9. Danial, L., Pikhay, E., Herbelin, E. et al. “Two-terminal floating-gate transistors with a low-power memristive operation mode for analogue neuromorphic computing“. Nat Electron (2019). doi:10.1038/s41928-019-0331-1.
  10. Natalia Barger, Phyana Litovco, Ximing Li, Mouna Habib, Ramez Daniel, “Synthetic metabolic computation in a bioluminescence-sensing system“, Nucleic Acids Research, Volume 47, Issue 19, 04 November 2019, Pages 10464–10474, https://doi.org/10.1093/nar/gkz807.
  11. R. A. Sinni and R. Daniel, “Biophysical Analysis for Implementing Genetic Associative Memory Using Hopfield Networks,” 2019 IEEE Biomedical Circuits and Systems Conference (BioCAS), Nara, Japan, 2019, pp. 1-4. doi: 10.1109/BIOCAS.2019.8919076.
  12. R. Daniel, “Biophysical Analysis for Implementing Neuro-inspired Computing in Living Cells”, Proceedings of the 11th International Workshop on Bio-Design Automation, 2019. 
  13. L.Rizik, L. Danial, R. Daniel, “Design Principles of Data Converters for Building Large-Scale Gene Networks in Living Cells“, Proceedings of the 4rd ACM International Conference on Nanoscale Computing and Communication, 2017.
  14. H. Abo Hanna, L. Danial, S. Kvatinsky, and R. Daniel, “Modeling Biochemical Reactions and Gene Networks with Memristors”. to appear in  2017 IEEE Biomedical Circuits and Systems Conference, BioCAS 2017.
  15. R. Daniel, S. Kvatinsky, Combining Biology and Electronics using Emerging Memristive Technologies, TowerJazz Technical Journal, 8, 2017.
  16. L. Rizik, Y. Ram, R. Daniel, “Noise Tolerance Analysis for Reliable Analog and Digital Computation in Living Cells“, 2016. J Bioengineer & Biomedical Sci 6:186. doi:10.4172/2155-9538.1000186
  17. R. Daniel, Noise Tolerance Analysis for Reliable Analog Computation in Living Cells, Proceedings of the 8th International Workshop on Bio-Design Automation, 2016.  
  18. B. Jusiak, R. Daniel, F. Farzadfard, L. Nissim L, O. Purcell, J. Rubens and T. K. Lu T, “Synthetic Gene Networks”, review paper, Encyclopedia of Molecular Cell Biology and Molecular Medicine, October 20, 2014.
  19. R. Daniel, J. Rubens, R. Sarpeshkar, and T. K. Lu, “Synthetic Analog Computation in Living Cells”, Nature May 2013, doi:10.1038/nature12148
  20. R. Daniel, S. S. Woo, L. Turicchia, and R. Sarpeshkar, “Analog Transistor Models of Bacterial Genetic Circuits“, Proceedings of 2011 IEEE Symposium on Biological Circuits and Systems (BioCAS) Conference, 333-336, San Diego, CA, November 2011.
  21. R. Daniel, R./files/2020/06/Analog-Transistor-Models-of-Bacterial-Genetic-Circuits.pdf Almog, and Y. Shacham-Diamand, “Characterization Methods of a Whole-Cell Bioluminescent Biosensor “, IEEE Sensor Journal, vol. 10 (2), 274-280, 2010.
  22. R. Daniel, R. Almog, and Y. Shacham-Diamand, “Stochastic Signaling in Biochemical Cascade Genetic System and Gene Expression in Genetically Engineered Living Cells”, Physical Review E, vol. 81 (4), 2010 (041903).
  23. Y. Shacham-Diamand, R. Almog, R. Daniel, A. Rabner and R. Popovtzer, “Nano-Bio Interfacing with Living Cell Bio-Chips”, Nanomedicine and Nanorobotics, Edited by Klaus D. Sattler, CRC Press 2010.
  24. R. Almog, R. Daniel,  S. Vernick, A. Ron, H. Ben-Yoav, and Y. Shacham-Diamand, “On-Chip Detection of Cellular Activity”, Advances in Biochemical
    Engineering/Biotechnology, vol. 117, 179-191, 2010.
  25. Y. Shacham-Diamand, S. Belkin, J. Rishpon, T. Elad, S. Melamed, A. Biran, S. Yagur-Kroll, R., Almog, R. Daniel, H. Ben-Yoav, A. Rabner, S. Vernick, N. Elman, and R. Popovtzer, “Optical and Electrical Interfacing Technologies for Living Cell Bio-Chips. Current Pharmaceutical Biotechnology, vol. 11(4), 376-383, 2010.
  26. A. Ron, I. Shur, R. Daniel, R. Raj Singh, N. Fishelson, N. Croitoru, D. Benayahu, and Y. Shacham-Diamand, “Dielectric Screening of Early Differentiation Patterns in Mesenchymal Stem Cells Induced By Steroid Hormones”, Bioelectrochemistry vol. 78 (2), 161-172, 2010.
  27. R. Daniel, R. Almog, Y. Sverdlov, S. Yagurkroll, S. Belkin and Y. Shacham-Diamand, “Development of a Quantitative Optical Biochip Based on a Double Integrating Sphere System that Determines Absolute Photon Number in Bioluminescent Solution: Application to Quantum Yield Scale Realization,” Journal of Applied Optics, vol. 48, 3217–3225, 2009. Selected to Virtual Journal for Biomedical Optics Vol. 4, 2009.
  28. R. Daniel, R. Almog, A. Ron, S. Belkin, and Y. Shachm-Diamand, “Modeling and Measurement of a Whole-cell Bioluminescent Biosensor Based on a Single Photon Avalanche Diode,“ Biosensors and Bioelectronics, vol. 24, 882-887, 2008.
  29. R. Daniel, A. Ruzin, Y. Roizin, and Y. Shaham-Diamand “Subthreshold Slope and Transconductance Degradation Model in Cycled Hot Electron Injection Programmed/Hot Hole Erased Silicon-Oxide-Nitride-Oxide-Silicon Memories”, Journal of Applied physics ,vol. 104, 2008 (054502).
  30. R. Daniel, A. Ruzin, and Y. Roizin “Trap Generation in Cycled Hot-Electron-Injection-Programed/Hot-Hole-Erased Silicon-Oxide-Nitride-Oxide-Silicon Memories”. Journal of Applied physics, vol. 15, 2006 (044502).
  31. R. Daniel, Y. Shaham-Diamand and Y .Roizin “Interface States In Cycled Hot Electron Injection Program/Hot Hole Erase Silicon–Oxide-Nitride–Oxide–Silicon Memories” Applied Physics Letters, vol. 85 (25), 6266-6268, 2004.
  32. Y, Roizin, R. Daniel, S. Greenberg, M. Gutman, M. Lisiansiky, V. Kairys, E. Pikhy, and P. Zisman “ Interface Traps and Reliability Performance of microFlah Memory “ NVSM, 85-87, 2004.